SNP Report

Basic Infomation

Name	rs293560 dbSNP
Location	chr:20,31089316
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 24)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12480462	0.85[ASN][1000 genomes]
rs1555133	0.82[CHB][hapmap]
rs1737891	1.00[JPT][hapmap]
rs2143534	0.85[ASN][1000 genomes]
rs293535	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs293537	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs293538	0.84[EUR][1000 genomes]
rs293539	0.87[EUR][1000 genomes]
rs293540	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs293541	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs293542	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs293545	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs293548	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs293551	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs293552	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs293555	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs293556	0.85[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs293557	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4911234	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4911235	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6087398	0.82[JPT][hapmap]
rs6141734	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs756001	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs875519	0.82[CHB][hapmap];0.88[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
C20orf112	Distal transcriptional regulation
C20orf112	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)