SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12480462	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1535374	0.83[MEX][hapmap]
rs1555132	0.83[AMR][1000 genomes]
rs17356521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2143534	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs293535	0.81[CHD][hapmap]
rs293540	0.91[CHB][hapmap];0.81[CHD][hapmap]
rs293541	0.91[CHB][hapmap];0.81[CHD][hapmap]
rs293555	0.91[CHB][hapmap];0.96[CHD][hapmap]
rs293556	0.91[CHB][hapmap]
rs293560	0.82[CHB][hapmap]
rs34310097	0.89[EUR][1000 genomes]
rs4911102	0.83[MEX][hapmap]
rs4911234	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[GIH][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4911235	0.89[CEU][hapmap];0.91[CHB][hapmap];0.91[GIH][hapmap];0.97[TSI][hapmap];0.80[EUR][1000 genomes]
rs6058714	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6141728	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6141734	0.95[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7268588	0.83[MEX][hapmap]
rs875519	0.91[CHB][hapmap];0.96[CHD][hapmap];0.96[MEX][hapmap]
rs879829	0.83[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
C20orf112	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)