SNP Report
Basic Infomation
| Name | rs7268588 dbSNP |
|---|---|
| Location | chr:20,31154273 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 54)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875486 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1108445 | 0.95[EUR][1000 genomes] |
| rs12625036 | 0.85[EUR][1000 genomes] |
| rs1535374 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1555133 | 0.83[MEX][hapmap] |
| rs17123396 | 1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs1868385 | 0.82[EUR][1000 genomes] |
| rs293569 | 0.86[CHD][hapmap];0.91[JPT][hapmap] |
| rs293572 | 0.86[CHD][hapmap];0.91[JPT][hapmap] |
| rs34627022 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3746614 | 0.86[EUR][1000 genomes] |
| rs3746615 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4911097 | 1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs4911102 | 0.92[CEU][hapmap];0.80[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4911237 | 0.86[EUR][1000 genomes] |
| rs4911238 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4911241 | 0.92[CEU][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs57351160 | 0.90[ASN][1000 genomes] |
| rs59086887 | 0.97[ASN][1000 genomes] |
| rs6058742 | 0.93[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6058753 | 0.92[MEX][hapmap];0.83[AMR][1000 genomes] |
| rs60764690 | 0.97[ASN][1000 genomes] |
| rs6087395 | 0.91[JPT][hapmap] |
| rs6087924 | 0.91[JPT][hapmap] |
| rs6087933 | 0.83[ASN][1000 genomes] |
| rs6119266 | 0.83[ASN][1000 genomes] |
| rs6119879 | 1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs6119880 | 0.86[EUR][1000 genomes] |
| rs6119897 | 1.00[CEU][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6119899 | 0.91[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs6119900 | 0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs6119904 | 0.92[CEU][hapmap];0.93[CHB][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6141314 | 0.81[EUR][1000 genomes] |
| rs6141741 | 0.86[EUR][1000 genomes] |
| rs6141743 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6141745 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6141746 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6141747 | 0.91[JPT][hapmap] |
| rs6141748 | 0.86[CHD][hapmap];0.91[JPT][hapmap] |
| rs6141751 | 0.86[CHD][hapmap];0.91[JPT][hapmap] |
| rs6141752 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6141753 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6141755 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6141759 | 0.93[EUR][1000 genomes] |
| rs67918653 | 0.81[EUR][1000 genomes] |
| rs733852 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs879829 | 1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs880112 | 0.83[CHD][hapmap];0.91[JPT][hapmap] |
| rs881432 | 0.90[JPT][hapmap] |
| rs910889 | 0.86[EUR][1000 genomes] |
| rs910890 | 0.85[EUR][1000 genomes] |
| rs910891 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs911527 | 1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs911529 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000233293 | Distal transcriptional regulation |
| C20orf112 | RNA binding protein mediated regulation |
| ENSG00000233293 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014