SNP Report

Basic Infomation

Name	rs4911102 dbSNP
Location	chr:20,31179500
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 38)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10875486	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1108445	0.83[EUR][1000 genomes]
rs1535374	0.92[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1555133	0.83[MEX][hapmap]
rs17123396	0.91[JPT][hapmap]
rs293569	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs293572	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs34627022	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3746615	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4911097	0.92[CEU][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap]
rs4911238	0.80[AMR][1000 genomes]
rs4911241	0.85[CEU][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6058742	0.83[JPT][hapmap]
rs6058753	0.81[JPT][hapmap];0.92[MEX][hapmap];0.88[AMR][1000 genomes]
rs6087395	0.81[JPT][hapmap]
rs6087924	0.81[JPT][hapmap]
rs6119879	0.92[CEU][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.88[MEX][hapmap]
rs6119897	0.92[CEU][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs6119899	0.81[JPT][hapmap]
rs6119900	0.90[CHD][hapmap];0.90[JPT][hapmap]
rs6119904	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs6141743	0.80[AMR][1000 genomes]
rs6141745	0.80[AMR][1000 genomes]
rs6141746	0.80[AMR][1000 genomes]
rs6141747	0.81[JPT][hapmap]
rs6141748	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs6141751	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs6141752	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6141753	0.87[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6141755	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6141759	0.83[EUR][1000 genomes]
rs7268588	0.92[CEU][hapmap];0.80[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs733852	0.80[AMR][1000 genomes]
rs879829	0.92[CEU][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.80[AMR][1000 genomes]
rs880112	0.80[CHD][hapmap];0.81[JPT][hapmap]
rs910891	0.80[AMR][1000 genomes]
rs911527	0.92[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs911529	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000204393	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
DEFB119	SCAN
BCL2L1	SCAN
ID1	SCAN
SPAG4	SCAN