SNP Report

Basic Infomation

Name	rs1535374 dbSNP
Location	chr:20,31162125
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 56)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10875486	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1108445	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12625036	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1555133	0.83[MEX][hapmap]
rs17123396	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1868385	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2002361	0.82[ASN][1000 genomes]
rs293569	0.90[CHD][hapmap];0.91[JPT][hapmap]
rs293572	0.90[CHD][hapmap];0.91[JPT][hapmap]
rs34627022	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3746614	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3746615	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4911097	1.00[CEU][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4911102	0.92[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4911237	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4911238	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4911241	0.92[CEU][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57351160	0.95[ASN][1000 genomes]
rs59086887	0.92[ASN][1000 genomes]
rs6058742	0.87[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs6058753	0.92[MEX][hapmap];0.83[AMR][1000 genomes]
rs60764690	0.92[ASN][1000 genomes]
rs6087395	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6087924	0.91[JPT][hapmap]
rs6087933	0.88[ASN][1000 genomes]
rs6119266	0.88[ASN][1000 genomes]
rs6119879	1.00[CEU][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6119880	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6119897	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6119899	0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs6119900	0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6119904	0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];0.84[JPT][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6141314	0.80[EUR][1000 genomes]
rs6141318	0.82[ASN][1000 genomes]
rs6141741	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6141743	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6141745	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6141746	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6141747	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6141748	0.90[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6141751	0.90[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6141752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6141753	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6141755	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6141759	0.92[EUR][1000 genomes]
rs67918653	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7268588	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs733852	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs879829	1.00[CEU][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs880112	0.87[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs881432	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs910889	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs910890	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs910891	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs911527	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs911529	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
C20orf203	Distal transcriptional regulation
ENSG00000233293	Distal transcriptional regulation
C20orf112	Distal transcriptional regulation
ENSG00000228156	Distal transcriptional regulation
C20orf112	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
DEFB119	SCAN
BCL2L1	SCAN