SNP Report

Basic Infomation

Name	rs6141753 dbSNP
Location	chr:20,31158635
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 55)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10875486	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1108445	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12625036	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1535374	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17123396	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1868385	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2002361	0.82[ASN][1000 genomes]
rs293569	0.91[JPT][hapmap]
rs293572	0.91[JPT][hapmap]
rs34627022	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3746614	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3746615	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4911097	0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4911102	0.87[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4911237	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4911238	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4911241	0.91[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57351160	0.96[ASN][1000 genomes]
rs59086887	0.91[ASN][1000 genomes]
rs6058742	0.87[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs6058753	0.83[AMR][1000 genomes]
rs60764690	0.91[ASN][1000 genomes]
rs6087395	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs6087924	0.92[JPT][hapmap]
rs6087933	0.87[ASN][1000 genomes]
rs6119266	0.87[ASN][1000 genomes]
rs6119879	0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6119880	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6119897	0.91[JPT][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6119899	0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs6119900	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6119904	1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6141314	0.81[EUR][1000 genomes]
rs6141318	0.82[ASN][1000 genomes]
rs6141741	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6141743	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6141745	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6141746	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6141747	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs6141748	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6141751	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6141752	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6141755	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6141759	0.93[EUR][1000 genomes]
rs67918653	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7268588	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs733852	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs879829	0.91[JPT][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs880112	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs881432	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs910889	0.86[EUR][1000 genomes]
rs910890	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs910891	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs911527	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs911529	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
C20orf112	RNA binding protein mediated regulation
ENSG00000233293	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)