SNP Report
Basic Infomation
| Name | rs6058753 dbSNP |
|---|---|
| Location | chr:20,31184281 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11697333 | 0.84[EUR][1000 genomes] |
| rs1535374 | 0.92[MEX][hapmap];0.83[AMR][1000 genomes] |
| rs4911102 | 0.81[JPT][hapmap];0.92[MEX][hapmap];0.88[AMR][1000 genomes] |
| rs4911241 | 0.88[MEX][hapmap] |
| rs6087398 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6087945 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6119897 | 0.96[MEX][hapmap] |
| rs6119899 | 0.81[JPT][hapmap] |
| rs6141752 | 0.83[AMR][1000 genomes] |
| rs6141753 | 0.83[AMR][1000 genomes] |
| rs6141755 | 0.83[AMR][1000 genomes] |
| rs7268588 | 0.92[MEX][hapmap];0.83[AMR][1000 genomes] |
| rs751199 | 0.94[CEU][hapmap];0.92[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs879829 | 0.92[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000204393 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014