SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11697333	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1737891	0.86[JPT][hapmap]
rs293535	0.86[JPT][hapmap]
rs293540	0.86[JPT][hapmap]
rs293541	0.86[JPT][hapmap]
rs293542	0.86[JPT][hapmap]
rs293545	0.86[JPT][hapmap]
rs293548	0.86[JPT][hapmap]
rs293551	0.86[JPT][hapmap]
rs293552	0.86[JPT][hapmap]
rs293555	0.86[JPT][hapmap]
rs293556	0.86[JPT][hapmap]
rs293560	0.82[JPT][hapmap]
rs293565	0.86[JPT][hapmap]
rs293566	0.87[MEX][hapmap]
rs293567	0.87[MEX][hapmap]
rs293570	0.86[MEX][hapmap]
rs4911234	0.86[JPT][hapmap];0.82[MEX][hapmap]
rs4911235	0.86[JPT][hapmap]
rs6058753	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6087945	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6119904	0.83[MEX][hapmap]
rs6141319	0.91[MEX][hapmap]
rs6141734	0.86[JPT][hapmap]
rs751199	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs875519	1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000204393	Proximal transcriptional regulation
ENSG00000204393	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
ID1	SCAN
SPAG4	SCAN