SNP Report

Basic Infomation

Name	rs293570 dbSNP
Location	chr:20,31105023
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1022732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11167172	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs13111	1.00[CHD][hapmap]
rs1555444	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1555445	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs159058	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1810635	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs293554	1.00[CHD][hapmap]
rs293566	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293567	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4578930	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4911097	0.83[MEX][hapmap]
rs4911100	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4911242	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4911243	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4911244	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4911245	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4911246	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6057598	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6057599	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6058746	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6087398	0.86[MEX][hapmap]
rs6087941	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6119267	0.88[CEU][hapmap]
rs6119269	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6119272	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6119879	0.83[MEX][hapmap]
rs6119893	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6119904	0.86[MEX][hapmap]
rs6119909	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6141319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6579020	1.00[CHB][hapmap]
rs7267720	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs911526	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
C20orf112	Distal transcriptional regulation
C20orf112	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)