SNP Report
Basic Infomation
| Name | rs4578930 dbSNP |
|---|---|
| Location | chr:20,31173490 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1022732 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1555444 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1555445 | 0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1810635 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs293570 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4911100 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4911242 | 0.91[EUR][1000 genomes] |
| rs4911243 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4911244 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4911245 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4911246 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6057598 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6057599 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6058746 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6087941 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6119267 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6119269 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6119893 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6119909 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6141319 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs67696533 | 0.88[EUR][1000 genomes] |
| rs7267720 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs911526 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C20orf112 | Proximal transcriptional regulation |
| ENSG00000204393 | Proximal transcriptional regulation |
| C20orf112 | Distal transcriptional regulation |
| DNMT3B | Distal transcriptional regulation |
| ENSG00000233293 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014