SNP Report
Name | rs1555444   dbSNP |
---|---|
Location | chr:20,31175131 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1022732 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1555445 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs159058 | 0.81[EUR][1000 genomes] |
rs1810635 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs2005268 | 0.83[AMR][1000 genomes] |
rs2005269 | 0.82[AMR][1000 genomes] |
rs293570 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs4578930 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs4911100 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4911242 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs4911243 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs4911244 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4911245 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4911246 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6057598 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6057599 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6058746 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6087399 | 0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs6087941 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6119267 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6119269 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6119893 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs6119909 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6141319 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs67696533 | 0.89[EUR][1000 genomes] |
rs7267720 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs911526 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
C20orf112 | Proximal transcriptional regulation |
ENSG00000204393 | Proximal transcriptional regulation |
C20orf112 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014