SNP Report

Basic Infomation

Name	rs1555444 dbSNP
Location	chr:20,31175131
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 27)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1022732	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1555445	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159058	0.81[EUR][1000 genomes]
rs1810635	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2005268	0.83[AMR][1000 genomes]
rs2005269	0.82[AMR][1000 genomes]
rs293570	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4578930	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4911100	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4911242	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4911243	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4911244	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4911245	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4911246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6057598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6057599	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6058746	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6087399	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6087941	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6119267	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6119269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6119893	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6119909	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6141319	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67696533	0.89[EUR][1000 genomes]
rs7267720	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs911526	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
C20orf112	Proximal transcriptional regulation
ENSG00000204393	Proximal transcriptional regulation
C20orf112	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)