SNP Report
Basic Infomation
| Name | rs13111 dbSNP |
|---|---|
| Location | chr:20,30922399 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1056776 | 0.92[CEU][hapmap] |
| rs12479832 | 0.92[CEU][hapmap] |
| rs17266770 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17267078 | 0.92[CEU][hapmap] |
| rs1884866 | 0.92[CEU][hapmap] |
| rs2281361 | 0.92[CEU][hapmap] |
| rs293554 | 1.00[CHD][hapmap] |
| rs293566 | 1.00[CHD][hapmap] |
| rs293567 | 1.00[CHD][hapmap] |
| rs293570 | 1.00[CHD][hapmap] |
| rs34329220 | 0.89[EUR][1000 genomes] |
| rs35030210 | 1.00[ASN][1000 genomes] |
| rs3787372 | 0.92[CEU][hapmap] |
| rs3803989 | 0.92[CEU][hapmap] |
| rs3813922 | 0.92[CEU][hapmap] |
| rs6061194 | 0.92[CEU][hapmap] |
| rs6087845 | 0.92[CEU][hapmap] |
| rs6119778 | 0.92[CEU][hapmap] |
| rs6119786 | 0.84[CEU][hapmap] |
| rs6121381 | 0.92[CEU][hapmap] |
| rs6121388 | 1.00[CEU][hapmap] |
| rs67208722 | 1.00[ASN][1000 genomes] |
| rs73104662 | 1.00[ASN][1000 genomes] |
| rs73104673 | 1.00[ASN][1000 genomes] |
| rs73105761 | 1.00[ASN][1000 genomes] |
| rs73107815 | 1.00[ASN][1000 genomes] |
| rs73108529 | 1.00[ASN][1000 genomes] |
| rs733320 | 0.92[CEU][hapmap] |
| rs8118061 | 0.92[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIF3B | Proximal transcriptional regulation |
| ASXL1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014