SNP Report
Basic Infomation
| Name | rs6119786 dbSNP |
|---|---|
| Location | chr:20,30827282 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 47)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1002137 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1029116 | 0.85[MEX][hapmap] |
| rs1056776 | 0.92[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11905172 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13111 | 0.84[CEU][hapmap] |
| rs1884865 | 0.98[EUR][1000 genomes] |
| rs1884866 | 0.92[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2235898 | 0.82[CHB][hapmap] |
| rs2235899 | 0.82[CHB][hapmap] |
| rs2235902 | 0.82[CHB][hapmap] |
| rs28396287 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs3787371 | 0.90[JPT][hapmap] |
| rs3787372 | 0.92[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3803989 | 1.00[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3803990 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3813922 | 0.92[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs3818219 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4589835 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs4911088 | 0.81[JPT][hapmap] |
| rs4911545 | 0.82[CHB][hapmap] |
| rs4911546 | 0.82[CHB][hapmap] |
| rs4911547 | 0.82[CHB][hapmap] |
| rs4911548 | 0.82[CHB][hapmap] |
| rs4911549 | 0.82[CHB][hapmap] |
| rs6058541 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs6058556 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6061185 | 0.82[CHB][hapmap] |
| rs6061186 | 0.81[CHB][hapmap] |
| rs6061198 | 0.82[CHB][hapmap] |
| rs6061206 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs6087835 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6087839 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6087845 | 0.92[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6087862 | 0.90[MEX][hapmap] |
| rs6089216 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6119776 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6119777 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6119778 | 0.92[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6119784 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6119792 | 0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6121381 | 1.00[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6121388 | 0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6141277 | 0.90[JPT][hapmap] |
| rs6141636 | 0.82[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap] |
| rs6142622 | 0.85[JPT][hapmap] |
| rs6142632 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs733320 | 1.00[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000243952 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014