SNP Report

Basic Infomation

Name	rs6141277 dbSNP
Location	chr:20,30831157
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 96)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1002137	0.83[ASN][1000 genomes]
rs1028563	0.88[CHB][hapmap];1.00[YRI][hapmap]
rs1029116	0.88[CHB][hapmap]
rs1056776	0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs11699120	0.88[CHB][hapmap]
rs11905172	0.86[ASN][1000 genomes]
rs1321415	0.81[EUR][1000 genomes]
rs1412997	0.82[CHB][hapmap]
rs1412998	0.87[CHB][hapmap]
rs14353	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs1467479	0.82[CHB][hapmap]
rs1884865	0.96[ASN][1000 genomes]
rs1884866	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1885292	0.89[CHB][hapmap]
rs1984792	0.81[EUR][1000 genomes]
rs2093146	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2151437	0.82[CHB][hapmap]
rs2208131	0.88[CHB][hapmap]
rs2235898	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap]
rs2235899	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs2235900	1.00[CEU][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap]
rs2235902	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap]
rs2281362	0.96[CEU][hapmap]
rs2281364	0.82[EUR][1000 genomes]
rs2295035	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs2295454	0.88[CHB][hapmap]
rs2295762	0.88[CHB][hapmap]
rs2295764	0.88[CHB][hapmap]
rs2377416	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28396287	0.83[ASN][1000 genomes]
rs34699730	0.82[AMR][1000 genomes]
rs35290636	0.82[EUR][1000 genomes]
rs3746604	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3746606	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs3787369	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes]
rs3787371	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3787372	0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs3787373	0.88[CHB][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs3803989	0.82[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs3803990	0.86[ASN][1000 genomes]
rs3813922	0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs3818190	0.89[CHB][hapmap]
rs3818219	0.88[ASN][1000 genomes]
rs4575791	0.88[CHB][hapmap]
rs4589835	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4911088	0.88[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4911089	0.81[EUR][1000 genomes]
rs4911229	0.88[CHB][hapmap]
rs4911543	1.00[CEU][hapmap]
rs4911545	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap]
rs4911546	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap]
rs4911547	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs4911548	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs4911549	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap]
rs4911550	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4911551	0.80[EUR][1000 genomes]
rs4911558	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6058541	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6058556	0.86[ASN][1000 genomes]
rs6061159	1.00[CEU][hapmap]
rs6061185	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap]
rs6061186	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs6061197	0.81[EUR][1000 genomes]
rs6061198	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs6061203	0.82[EUR][1000 genomes]
rs6061206	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6061208	0.82[EUR][1000 genomes]
rs6087835	0.85[ASN][1000 genomes]
rs6087839	0.88[ASN][1000 genomes]
rs6087845	0.89[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs6087862	0.88[CHB][hapmap]
rs6089216	0.86[ASN][1000 genomes]
rs6119771	0.96[CEU][hapmap]
rs6119776	0.86[ASN][1000 genomes]
rs6119777	0.86[ASN][1000 genomes]
rs6119778	0.83[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs6119784	0.88[ASN][1000 genomes]
rs6119786	0.90[JPT][hapmap]
rs6119792	0.91[ASN][1000 genomes]
rs6121381	0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6121388	0.82[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs6141294	0.88[CHB][hapmap]
rs6141302	0.88[CHB][hapmap]
rs6141636	0.92[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6141639	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6141646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6141657	0.82[EUR][1000 genomes]
rs6141659	0.88[CHB][hapmap];0.82[EUR][1000 genomes]
rs6141721	0.88[CHB][hapmap];1.00[YRI][hapmap]
rs6142609	1.00[CEU][hapmap]
rs6142614	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6142621	0.81[EUR][1000 genomes]
rs6142622	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6142630	0.84[ASN][1000 genomes]
rs6142632	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs733320	0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000243952	Distal transcriptional regulation
MIR1825	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)