SNP Report
Basic Infomation
| Name | rs1321415 dbSNP |
|---|---|
| Location | chr:20,30744218 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 85)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1002137 | 0.88[ASN][1000 genomes] |
| rs1056776 | 0.86[ASN][1000 genomes] |
| rs11905172 | 0.88[ASN][1000 genomes] |
| rs2235898 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2235899 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2235900 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2235901 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2235902 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2235904 | 0.88[EUR][1000 genomes] |
| rs2281358 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2281360 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2281362 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2281364 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2295035 | 0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2295036 | 0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2377416 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28396287 | 0.88[ASN][1000 genomes] |
| rs34699730 | 0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3746604 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3787369 | 0.96[EUR][1000 genomes] |
| rs3787371 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3787372 | 0.88[ASN][1000 genomes] |
| rs3803989 | 0.88[ASN][1000 genomes] |
| rs3803990 | 0.88[ASN][1000 genomes] |
| rs3813922 | 0.88[ASN][1000 genomes] |
| rs3818219 | 0.86[ASN][1000 genomes] |
| rs4589835 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4911197 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4911543 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4911545 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4911546 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4911547 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911548 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911549 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911550 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911551 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911553 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911558 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6058528 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6058534 | 0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058541 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6058556 | 0.88[ASN][1000 genomes] |
| rs6061159 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6061173 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6061185 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6061186 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6061196 | 0.94[ASN][1000 genomes] |
| rs6061197 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6061198 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6061203 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6061206 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6061208 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6087835 | 0.86[ASN][1000 genomes] |
| rs6087839 | 0.86[ASN][1000 genomes] |
| rs6087845 | 0.83[ASN][1000 genomes] |
| rs6089190 | 0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6089193 | 0.90[EUR][1000 genomes] |
| rs6089216 | 0.88[ASN][1000 genomes] |
| rs6119771 | 0.84[EUR][1000 genomes] |
| rs6119776 | 0.88[ASN][1000 genomes] |
| rs6119777 | 0.88[ASN][1000 genomes] |
| rs6119778 | 0.85[ASN][1000 genomes] |
| rs6119784 | 0.86[ASN][1000 genomes] |
| rs6119792 | 0.83[ASN][1000 genomes] |
| rs6121365 | 0.85[EUR][1000 genomes] |
| rs6121381 | 0.84[ASN][1000 genomes] |
| rs6121388 | 0.88[ASN][1000 genomes] |
| rs6141277 | 0.81[EUR][1000 genomes] |
| rs6141636 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6141639 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6141646 | 0.80[EUR][1000 genomes] |
| rs6142609 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6142613 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6142614 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6142615 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6142616 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6142617 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6142619 | 0.89[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6142620 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6142621 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6142622 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6142630 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6142632 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs62204984 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs733320 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TM9SF4 | Proximal transcriptional regulation |
| TM9SF4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014