SNP Report
Name | rs6119771   dbSNP |
---|---|
Location | chr:20,30770375 |
Allele | G/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs12479832 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs13040716 | 0.98[ASN][1000 genomes] |
rs1321415 | 0.84[EUR][1000 genomes] |
rs17266770 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
rs17267078 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs2235898 | 0.96[CEU][hapmap];0.82[EUR][1000 genomes] |
rs2235899 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
rs2235900 | 0.96[CEU][hapmap] |
rs2235901 | 0.82[EUR][1000 genomes] |
rs2235902 | 0.96[CEU][hapmap];0.82[EUR][1000 genomes] |
rs2235904 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2235905 | 0.89[ASN][1000 genomes] |
rs2281358 | 0.82[EUR][1000 genomes] |
rs2281360 | 0.83[EUR][1000 genomes] |
rs2281361 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
rs2281362 | 0.92[CEU][hapmap] |
rs2281363 | 0.93[ASN][1000 genomes] |
rs2281364 | 0.85[EUR][1000 genomes] |
rs2281365 | 0.93[ASN][1000 genomes] |
rs2295035 | 0.96[CEU][hapmap];0.81[EUR][1000 genomes] |
rs2295036 | 0.81[EUR][1000 genomes] |
rs2377416 | 0.85[EUR][1000 genomes] |
rs2424873 | 0.92[CHB][hapmap] |
rs34600074 | 0.81[ASN][1000 genomes] |
rs34627863 | 0.81[ASN][1000 genomes] |
rs35248350 | 0.87[ASN][1000 genomes] |
rs35779674 | 0.81[ASN][1000 genomes] |
rs3746604 | 0.86[EUR][1000 genomes] |
rs3787369 | 0.96[CEU][hapmap] |
rs3787371 | 0.96[CEU][hapmap];0.85[EUR][1000 genomes] |
rs3813921 | 0.83[CHB][hapmap] |
rs4589835 | 0.96[CEU][hapmap];0.85[EUR][1000 genomes] |
rs4911197 | 0.82[EUR][1000 genomes] |
rs4911543 | 0.96[CEU][hapmap] |
rs4911545 | 0.96[CEU][hapmap] |
rs4911546 | 0.96[CEU][hapmap] |
rs4911547 | 0.96[CEU][hapmap];0.84[EUR][1000 genomes] |
rs4911548 | 0.96[CEU][hapmap];0.84[EUR][1000 genomes] |
rs4911549 | 0.96[CEU][hapmap];0.80[EUR][1000 genomes] |
rs4911550 | 0.96[CEU][hapmap];0.84[EUR][1000 genomes] |
rs4911551 | 0.83[EUR][1000 genomes] |
rs4911553 | 0.83[EUR][1000 genomes] |
rs4911558 | 0.85[EUR][1000 genomes] |
rs6058526 | 0.92[CHB][hapmap];1.00[JPT][hapmap] |
rs6058528 | 0.82[EUR][1000 genomes] |
rs6058534 | 0.82[EUR][1000 genomes] |
rs6058541 | 0.96[CEU][hapmap];0.85[EUR][1000 genomes] |
rs6061159 | 0.96[CEU][hapmap] |
rs6061167 | 0.85[ASN][1000 genomes] |
rs6061168 | 0.85[ASN][1000 genomes] |
rs6061173 | 0.82[EUR][1000 genomes] |
rs6061185 | 0.96[CEU][hapmap];0.80[EUR][1000 genomes] |
rs6061186 | 0.96[CEU][hapmap];0.84[EUR][1000 genomes] |
rs6061194 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs6061197 | 0.84[EUR][1000 genomes] |
rs6061198 | 0.96[CEU][hapmap];0.84[EUR][1000 genomes] |
rs6061203 | 0.85[EUR][1000 genomes] |
rs6061206 | 0.96[CEU][hapmap];0.81[EUR][1000 genomes] |
rs6061208 | 0.85[EUR][1000 genomes] |
rs6089193 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6121365 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs6141277 | 0.96[CEU][hapmap] |
rs6141636 | 0.88[CEU][hapmap];0.82[EUR][1000 genomes] |
rs6141639 | 0.82[EUR][1000 genomes] |
rs6142609 | 0.96[CEU][hapmap] |
rs6142615 | 0.81[EUR][1000 genomes] |
rs6142616 | 0.82[EUR][1000 genomes] |
rs6142621 | 0.84[EUR][1000 genomes] |
rs6142622 | 0.96[CEU][hapmap] |
rs6142630 | 0.81[EUR][1000 genomes] |
rs6142632 | 0.96[CEU][hapmap];0.86[EUR][1000 genomes] |
rs7271281 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
rs8118061 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
TSPY26P | Distal transcriptional regulation |
PLAGL2 | Distal transcriptional regulation |
POFUT1 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014