SNP Report

Basic Infomation

Name	rs6119771 dbSNP
Location	chr:20,30770375
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 73)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12479832	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13040716	0.98[ASN][1000 genomes]
rs1321415	0.84[EUR][1000 genomes]
rs17266770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17267078	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2235898	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2235899	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2235900	0.96[CEU][hapmap]
rs2235901	0.82[EUR][1000 genomes]
rs2235902	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2235904	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2235905	0.89[ASN][1000 genomes]
rs2281358	0.82[EUR][1000 genomes]
rs2281360	0.83[EUR][1000 genomes]
rs2281361	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2281362	0.92[CEU][hapmap]
rs2281363	0.93[ASN][1000 genomes]
rs2281364	0.85[EUR][1000 genomes]
rs2281365	0.93[ASN][1000 genomes]
rs2295035	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2295036	0.81[EUR][1000 genomes]
rs2377416	0.85[EUR][1000 genomes]
rs2424873	0.92[CHB][hapmap]
rs34600074	0.81[ASN][1000 genomes]
rs34627863	0.81[ASN][1000 genomes]
rs35248350	0.87[ASN][1000 genomes]
rs35779674	0.81[ASN][1000 genomes]
rs3746604	0.86[EUR][1000 genomes]
rs3787369	0.96[CEU][hapmap]
rs3787371	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs3813921	0.83[CHB][hapmap]
rs4589835	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs4911197	0.82[EUR][1000 genomes]
rs4911543	0.96[CEU][hapmap]
rs4911545	0.96[CEU][hapmap]
rs4911546	0.96[CEU][hapmap]
rs4911547	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4911548	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4911549	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs4911550	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4911551	0.83[EUR][1000 genomes]
rs4911553	0.83[EUR][1000 genomes]
rs4911558	0.85[EUR][1000 genomes]
rs6058526	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6058528	0.82[EUR][1000 genomes]
rs6058534	0.82[EUR][1000 genomes]
rs6058541	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs6061159	0.96[CEU][hapmap]
rs6061167	0.85[ASN][1000 genomes]
rs6061168	0.85[ASN][1000 genomes]
rs6061173	0.82[EUR][1000 genomes]
rs6061185	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs6061186	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6061194	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6061197	0.84[EUR][1000 genomes]
rs6061198	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6061203	0.85[EUR][1000 genomes]
rs6061206	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs6061208	0.85[EUR][1000 genomes]
rs6089193	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6121365	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6141277	0.96[CEU][hapmap]
rs6141636	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs6141639	0.82[EUR][1000 genomes]
rs6142609	0.96[CEU][hapmap]
rs6142615	0.81[EUR][1000 genomes]
rs6142616	0.82[EUR][1000 genomes]
rs6142621	0.84[EUR][1000 genomes]
rs6142622	0.96[CEU][hapmap]
rs6142630	0.81[EUR][1000 genomes]
rs6142632	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7271281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs8118061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TSPY26P	Distal transcriptional regulation
PLAGL2	Distal transcriptional regulation
POFUT1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)