SNP Report

Basic Infomation

Name	rs3787369 dbSNP
Location	chr:20,30740434
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 63)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1321415	0.96[EUR][1000 genomes]
rs1884866	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs2235898	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2235899	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2235900	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2235901	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2235902	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2235904	0.84[EUR][1000 genomes]
rs2281358	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2281360	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2281362	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs2281364	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2295035	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2295036	0.91[EUR][1000 genomes]
rs2377416	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34699730	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3746604	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3787371	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4589835	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4911197	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4911543	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4911545	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4911546	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4911547	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4911548	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4911549	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4911550	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4911551	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4911553	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4911558	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6058528	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6058534	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6058541	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6061159	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6061173	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6061185	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6061186	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6061197	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6061198	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6061203	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6061206	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6061208	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6089190	0.83[EUR][1000 genomes]
rs6089193	0.86[EUR][1000 genomes]
rs6119771	0.96[CEU][hapmap]
rs6121365	0.81[EUR][1000 genomes]
rs6141277	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes]
rs6141636	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs6141639	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6141646	0.85[AMR][1000 genomes]
rs6142609	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6142613	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6142614	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6142615	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6142616	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6142617	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6142619	0.87[EUR][1000 genomes]
rs6142620	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6142621	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6142622	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6142630	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6142632	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62204984	0.89[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
TM9SF4	Distal transcriptional regulation
TM9SF4	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)