SNP Report
Basic Infomation
| Name | rs2281362 dbSNP |
|---|---|
| Location | chr:20,30728528 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 56)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1028563 | 0.82[GIH][hapmap] |
| rs1321415 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2151437 | 0.82[GIH][hapmap] |
| rs2235898 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.83[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2235899 | 0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2235900 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs2235901 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2235902 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2281358 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2281360 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2281364 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2295035 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs2295036 | 0.84[EUR][1000 genomes] |
| rs2377416 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs34699730 | 0.80[EUR][1000 genomes] |
| rs3746606 | 0.81[GIH][hapmap] |
| rs3787369 | 0.96[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs3787371 | 0.96[CEU][hapmap];0.86[GIH][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap] |
| rs3787373 | 0.82[GIH][hapmap] |
| rs4589835 | 0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4911197 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4911543 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap] |
| rs4911545 | 0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4911546 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs4911547 | 0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4911548 | 0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4911549 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs4911550 | 0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4911551 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4911553 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6058528 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6058534 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6058541 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6061159 | 0.96[CEU][hapmap] |
| rs6061173 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6061185 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs6061186 | 0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6061197 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6061198 | 0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6061203 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6061206 | 0.96[CEU][hapmap] |
| rs6061208 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6119771 | 0.92[CEU][hapmap] |
| rs6141277 | 0.96[CEU][hapmap] |
| rs6141636 | 0.88[CEU][hapmap];0.91[GIH][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap] |
| rs6141659 | 0.82[GIH][hapmap] |
| rs6142609 | 0.96[CEU][hapmap] |
| rs6142613 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6142614 | 0.80[EUR][1000 genomes] |
| rs6142615 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6142616 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6142617 | 0.81[EUR][1000 genomes] |
| rs6142620 | 0.81[EUR][1000 genomes] |
| rs6142621 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6142622 | 0.96[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs6142632 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.88[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TM9SF4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014