SNP Report
Name | rs6061185   dbSNP |
---|---|
Location | chr:20,30731472 |
Allele | A/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1002137 | 0.88[ASN][1000 genomes] |
rs1028563 | 0.94[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap] |
rs1029116 | 0.94[CHB][hapmap];0.81[CHD][hapmap] |
rs1056776 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
rs11905172 | 0.88[ASN][1000 genomes] |
rs1321415 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs14353 | 0.87[CHB][hapmap];0.86[GIH][hapmap] |
rs1884866 | 0.88[CHB][hapmap];0.84[JPT][hapmap] |
rs2151437 | 0.87[CHB][hapmap];0.91[GIH][hapmap] |
rs2235898 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2235899 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2235900 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2235901 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2235902 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2235904 | 0.84[EUR][1000 genomes] |
rs2281358 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2281360 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2281362 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
rs2281364 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2295035 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2295036 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2377416 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs28396287 | 0.88[ASN][1000 genomes] |
rs34699730 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs3746604 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs3746606 | 0.87[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap] |
rs3787369 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs3787371 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs3787372 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
rs3787373 | 0.94[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.83[MEX][hapmap] |
rs3803989 | 1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
rs3803990 | 0.88[ASN][1000 genomes] |
rs3813922 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
rs3818219 | 0.86[ASN][1000 genomes] |
rs4589835 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4911088 | 0.94[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap] |
rs4911197 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4911198 | 0.81[GIH][hapmap] |
rs4911543 | 1.00[CEU][hapmap];0.80[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4911545 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs4911546 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4911547 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4911548 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4911549 | 0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4911550 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4911551 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4911553 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4911558 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6058528 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6058534 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6058541 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6058556 | 0.88[ASN][1000 genomes] |
rs6061159 | 1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6061173 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6061186 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6061196 | 0.94[ASN][1000 genomes] |
rs6061197 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6061198 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6061203 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6061206 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6061208 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6087835 | 0.86[ASN][1000 genomes] |
rs6087839 | 0.86[ASN][1000 genomes] |
rs6087845 | 0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
rs6087862 | 0.94[CHB][hapmap] |
rs6089190 | 0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6089193 | 0.86[EUR][1000 genomes] |
rs6089216 | 0.88[ASN][1000 genomes] |
rs6119771 | 0.96[CEU][hapmap];0.80[EUR][1000 genomes] |
rs6119776 | 0.88[ASN][1000 genomes] |
rs6119777 | 0.88[ASN][1000 genomes] |
rs6119778 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |
rs6119784 | 0.86[ASN][1000 genomes] |
rs6119786 | 0.82[CHB][hapmap] |
rs6119792 | 0.83[ASN][1000 genomes] |
rs6121365 | 0.82[EUR][1000 genomes] |
rs6121381 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes] |
rs6121388 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
rs6141277 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap] |
rs6141636 | 0.81[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.84[TSI][hapmap];0.92[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6141639 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6141659 | 0.94[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.83[MEX][hapmap] |
rs6142609 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6142613 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6142614 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6142615 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6142616 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6142617 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6142619 | 0.88[EUR][1000 genomes] |
rs6142620 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6142621 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6142622 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6142630 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6142632 | 0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs62204984 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs733320 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
TM9SF4 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014