SNP Report

Basic Infomation

Name	rs6089193 dbSNP
Location	chr:20,30729488
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 74)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12479832	0.98[ASN][1000 genomes]
rs13040716	0.89[ASN][1000 genomes]
rs1321415	0.90[EUR][1000 genomes]
rs17266770	0.96[ASN][1000 genomes]
rs17267078	0.98[ASN][1000 genomes]
rs2235898	0.88[EUR][1000 genomes]
rs2235899	0.88[EUR][1000 genomes]
rs2235900	0.84[EUR][1000 genomes]
rs2235901	0.88[EUR][1000 genomes]
rs2235902	0.88[EUR][1000 genomes]
rs2235904	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2235905	0.98[ASN][1000 genomes]
rs2281358	0.88[EUR][1000 genomes]
rs2281360	0.89[EUR][1000 genomes]
rs2281361	0.93[ASN][1000 genomes]
rs2281363	0.93[ASN][1000 genomes]
rs2281364	0.89[EUR][1000 genomes]
rs2281365	0.93[ASN][1000 genomes]
rs2295034	0.86[ASN][1000 genomes]
rs2295035	0.87[EUR][1000 genomes]
rs2295036	0.87[EUR][1000 genomes]
rs2377416	0.89[EUR][1000 genomes]
rs34600074	0.89[ASN][1000 genomes]
rs34627863	0.89[ASN][1000 genomes]
rs34699730	0.83[EUR][1000 genomes]
rs35248350	0.96[ASN][1000 genomes]
rs35779674	0.89[ASN][1000 genomes]
rs36148565	0.87[ASN][1000 genomes]
rs3746604	0.80[EUR][1000 genomes]
rs3787369	0.86[EUR][1000 genomes]
rs4589835	0.89[EUR][1000 genomes]
rs4911197	0.88[EUR][1000 genomes]
rs4911543	0.82[EUR][1000 genomes]
rs4911545	0.83[EUR][1000 genomes]
rs4911546	0.84[EUR][1000 genomes]
rs4911547	0.90[EUR][1000 genomes]
rs4911548	0.90[EUR][1000 genomes]
rs4911549	0.86[EUR][1000 genomes]
rs4911550	0.90[EUR][1000 genomes]
rs4911551	0.89[EUR][1000 genomes]
rs4911553	0.89[EUR][1000 genomes]
rs6058526	0.86[ASN][1000 genomes]
rs6058528	0.88[EUR][1000 genomes]
rs6058534	0.88[EUR][1000 genomes]
rs6058541	0.89[EUR][1000 genomes]
rs6061159	0.82[EUR][1000 genomes]
rs6061167	0.93[ASN][1000 genomes]
rs6061168	0.93[ASN][1000 genomes]
rs6061173	0.88[EUR][1000 genomes]
rs6061185	0.86[EUR][1000 genomes]
rs6061186	0.90[EUR][1000 genomes]
rs6061194	0.98[ASN][1000 genomes]
rs6061197	0.90[EUR][1000 genomes]
rs6061198	0.90[EUR][1000 genomes]
rs6061203	0.89[EUR][1000 genomes]
rs6061206	0.85[EUR][1000 genomes]
rs6061208	0.89[EUR][1000 genomes]
rs6119771	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6121365	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6142609	0.82[EUR][1000 genomes]
rs6142613	0.85[EUR][1000 genomes]
rs6142614	0.84[EUR][1000 genomes]
rs6142615	0.87[EUR][1000 genomes]
rs6142616	0.88[EUR][1000 genomes]
rs6142617	0.84[EUR][1000 genomes]
rs6142619	0.82[EUR][1000 genomes]
rs6142620	0.86[EUR][1000 genomes]
rs6142621	0.90[EUR][1000 genomes]
rs6142622	0.86[EUR][1000 genomes]
rs6142630	0.85[EUR][1000 genomes]
rs66773564	0.87[ASN][1000 genomes]
rs7271281	0.96[ASN][1000 genomes]
rs73104692	0.86[ASN][1000 genomes]
rs8118061	0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TM9SF4	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)