SNP Report
Basic Infomation
| Name | rs13040716 dbSNP |
|---|---|
| Location | chr:20,30770205 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12479832 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17266770 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17267078 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2235904 | 0.87[ASN][1000 genomes] |
| rs2235905 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2281361 | 0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2281363 | 0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2281365 | 0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs34600074 | 0.83[ASN][1000 genomes] |
| rs34627863 | 1.00[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35248350 | 0.89[ASN][1000 genomes] |
| rs35779674 | 0.85[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs36148565 | 0.81[ASN][1000 genomes] |
| rs6061167 | 0.87[ASN][1000 genomes] |
| rs6061168 | 0.87[ASN][1000 genomes] |
| rs6061194 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6089193 | 0.89[ASN][1000 genomes] |
| rs6119771 | 0.98[ASN][1000 genomes] |
| rs66773564 | 1.00[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs67028492 | 1.00[AFR][1000 genomes] |
| rs7271281 | 0.89[ASN][1000 genomes] |
| rs73104692 | 1.00[AFR][1000 genomes] |
| rs8118061 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPY26P | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014