SNP Report

Basic Infomation

Name	rs6142619 dbSNP
Location	chr:20,30728813
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 54)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1321415	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2235898	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2235899	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2235900	0.85[EUR][1000 genomes]
rs2235901	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2235902	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2281358	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2281360	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2281364	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2295035	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2295036	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2377416	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs34699730	0.86[EUR][1000 genomes]
rs3746604	0.82[EUR][1000 genomes]
rs3787369	0.87[EUR][1000 genomes]
rs3787371	0.81[EUR][1000 genomes]
rs4589835	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4911197	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4911543	0.82[EUR][1000 genomes]
rs4911545	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4911546	0.85[EUR][1000 genomes]
rs4911547	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4911548	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4911549	0.88[EUR][1000 genomes]
rs4911550	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4911551	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4911553	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4911558	0.81[EUR][1000 genomes]
rs6058528	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6058534	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6058541	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6061159	0.82[EUR][1000 genomes]
rs6061173	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6061185	0.88[EUR][1000 genomes]
rs6061186	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6061197	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6061198	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6061203	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6061206	0.87[EUR][1000 genomes]
rs6061208	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6089190	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6089193	0.82[EUR][1000 genomes]
rs6121365	0.81[EUR][1000 genomes]
rs6142609	0.82[EUR][1000 genomes]
rs6142613	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6142614	0.84[EUR][1000 genomes]
rs6142615	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6142616	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6142617	0.85[EUR][1000 genomes]
rs6142620	0.87[EUR][1000 genomes]
rs6142621	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6142622	0.87[EUR][1000 genomes]
rs6142630	0.87[EUR][1000 genomes]
rs6142632	0.81[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
TM9SF4	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)