SNP Report
Basic Infomation
| Name | rs4911088 dbSNP |
|---|---|
| Location | chr:20,30861791 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 101)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1002137 | 0.82[ASN][1000 genomes] |
| rs1028563 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs1029116 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs1056776 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs11699120 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs11905172 | 0.85[ASN][1000 genomes] |
| rs13037142 | 0.83[EUR][1000 genomes] |
| rs1412997 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.84[MKK][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs1412998 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs14353 | 0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.81[EUR][1000 genomes] |
| rs1467479 | 0.95[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap] |
| rs1737887 | 0.87[CHB][hapmap] |
| rs1884866 | 0.81[CHB][hapmap];0.90[JPT][hapmap] |
| rs1885292 | 0.91[CEU][hapmap];1.00[CHB][hapmap] |
| rs1984792 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2093146 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2151437 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes] |
| rs2208131 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs2235898 | 0.94[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap] |
| rs2235899 | 0.94[CHB][hapmap];0.95[JPT][hapmap] |
| rs2235900 | 0.87[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap] |
| rs2235902 | 0.94[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap] |
| rs2295035 | 0.87[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap] |
| rs2295454 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs2295762 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap] |
| rs2295764 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap] |
| rs28396287 | 0.82[ASN][1000 genomes] |
| rs34315674 | 0.84[ASN][1000 genomes] |
| rs34358744 | 0.83[ASN][1000 genomes] |
| rs35290636 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3746606 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs3746611 | 0.95[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap] |
| rs3746612 | 0.91[CEU][hapmap];0.87[CHB][hapmap] |
| rs3787371 | 0.82[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap] |
| rs3787372 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs3787373 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3803989 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs3803990 | 0.85[ASN][1000 genomes] |
| rs3813922 | 0.94[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs3818190 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs3818219 | 0.84[ASN][1000 genomes] |
| rs4493341 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4575791 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap] |
| rs4589835 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs4911089 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4911229 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap] |
| rs4911543 | 0.89[GIH][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap] |
| rs4911545 | 0.94[CHB][hapmap];0.95[JPT][hapmap] |
| rs4911546 | 0.94[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap] |
| rs4911547 | 0.94[CHB][hapmap];0.95[JPT][hapmap] |
| rs4911548 | 0.94[CHB][hapmap];0.95[JPT][hapmap] |
| rs4911549 | 0.94[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap] |
| rs58921650 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6058541 | 0.94[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap] |
| rs6058556 | 0.85[ASN][1000 genomes] |
| rs6061159 | 0.83[JPT][hapmap] |
| rs6061185 | 0.94[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap] |
| rs6061186 | 1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs6061198 | 0.94[CHB][hapmap];0.95[JPT][hapmap] |
| rs6061206 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs6087835 | 0.83[ASN][1000 genomes] |
| rs6087839 | 0.84[ASN][1000 genomes] |
| rs6087845 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs6087862 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[ASN][1000 genomes] |
| rs6089216 | 0.85[ASN][1000 genomes] |
| rs6119231 | 0.84[ASN][1000 genomes] |
| rs6119776 | 0.85[ASN][1000 genomes] |
| rs6119777 | 0.85[ASN][1000 genomes] |
| rs6119778 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs6119784 | 0.84[ASN][1000 genomes] |
| rs6119786 | 0.81[JPT][hapmap] |
| rs6119792 | 0.86[ASN][1000 genomes] |
| rs6121381 | 0.94[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6121388 | 0.94[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs6141277 | 0.88[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6141289 | 0.83[EUR][1000 genomes] |
| rs6141292 | 0.81[EUR][1000 genomes] |
| rs6141293 | 0.81[EUR][1000 genomes] |
| rs6141294 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs6141302 | 0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.87[LWK][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap] |
| rs6141636 | 0.94[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[ASN][1000 genomes] |
| rs6141639 | 0.81[EUR][1000 genomes] |
| rs6141646 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6141657 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6141659 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6141666 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6141680 | 0.81[EUR][1000 genomes] |
| rs6141681 | 0.81[EUR][1000 genomes] |
| rs6141682 | 0.81[EUR][1000 genomes] |
| rs6141685 | 0.81[EUR][1000 genomes] |
| rs6141687 | 0.81[EUR][1000 genomes] |
| rs6141689 | 0.81[EUR][1000 genomes] |
| rs6141721 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap] |
| rs6141723 | 0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap] |
| rs6142609 | 0.81[CHB][hapmap];0.84[JPT][hapmap] |
| rs6142622 | 0.82[CHB][hapmap];0.85[JPT][hapmap] |
| rs6142632 | 0.94[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap] |
| rs62206870 | 0.81[EUR][1000 genomes] |
| rs62208761 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7273804 | 0.80[EUR][1000 genomes] |
| rs733320 | 0.94[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIF3B | Proximal transcriptional regulation |
| KIF3B | Distal transcriptional regulation |
| ENSG00000264308 | Distal transcriptional regulation |
| ASXL1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014