SNP Report
Basic Infomation
| Name | rs6141723 dbSNP |
|---|---|
| Location | chr:20,31036873 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 58)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1028563 | 0.86[ASW][hapmap];0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes] |
| rs1029116 | 0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap] |
| rs1040751 | 0.93[ASN][1000 genomes] |
| rs1040752 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11699120 | 0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs12480004 | 0.81[ASN][1000 genomes] |
| rs13039485 | 0.82[AMR][1000 genomes] |
| rs13039495 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs13043144 | 0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1412997 | 0.91[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.81[ASN][1000 genomes] |
| rs1412998 | 0.91[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.82[ASN][1000 genomes] |
| rs14353 | 0.86[ASW][hapmap];0.83[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes] |
| rs1467479 | 0.95[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1737887 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs1742980 | 0.89[ASN][1000 genomes] |
| rs1885292 | 0.91[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2151437 | 0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap] |
| rs2208131 | 0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.82[ASN][1000 genomes] |
| rs2236155 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2281542 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2295454 | 0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.82[ASN][1000 genomes] |
| rs2295762 | 0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2295763 | 0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2295764 | 0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2424873 | 0.80[JPT][hapmap] |
| rs2424876 | 0.81[ASN][1000 genomes] |
| rs2424885 | 0.86[ASN][1000 genomes] |
| rs3746606 | 0.86[ASW][hapmap];0.95[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap] |
| rs3746611 | 1.00[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3746612 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3787373 | 0.86[ASW][hapmap];0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap] |
| rs3813921 | 0.80[JPT][hapmap] |
| rs3818190 | 0.91[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4575791 | 0.91[CEU][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4911088 | 0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap] |
| rs4911093 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4911229 | 0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4911231 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4911232 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6058699 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6087862 | 0.87[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap] |
| rs6141292 | 0.81[ASN][1000 genomes] |
| rs6141293 | 0.81[ASN][1000 genomes] |
| rs6141294 | 0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.82[ASN][1000 genomes] |
| rs6141302 | 0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6141304 | 0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6141310 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6141659 | 0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap] |
| rs6141680 | 0.81[ASN][1000 genomes] |
| rs6141682 | 0.81[ASN][1000 genomes] |
| rs6141685 | 0.81[ASN][1000 genomes] |
| rs6141687 | 0.81[ASN][1000 genomes] |
| rs6141689 | 0.82[ASN][1000 genomes] |
| rs6141701 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6141721 | 1.00[ASW][hapmap];0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6141724 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs62206870 | 0.81[ASN][1000 genomes] |
| rs9798511 | 0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000236772 | Proximal transcriptional regulation |
| ASXL1 | Distal transcriptional regulation |
| CSTB | Distal transcriptional regulation |
| C20orf112 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014