SNP Report
Basic Infomation
| Name | rs1742980 dbSNP |
|---|---|
| Location | chr:20,31038157 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1040751 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1040752 | 0.84[ASN][1000 genomes] |
| rs1467479 | 0.83[ASN][1000 genomes] |
| rs1737887 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1885292 | 0.84[ASN][1000 genomes] |
| rs2281542 | 0.84[ASN][1000 genomes] |
| rs2295762 | 0.86[ASN][1000 genomes] |
| rs2295763 | 0.86[ASN][1000 genomes] |
| rs2295764 | 0.85[ASN][1000 genomes] |
| rs2424885 | 0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3746611 | 0.93[ASN][1000 genomes] |
| rs3746612 | 0.89[ASN][1000 genomes] |
| rs3818190 | 0.85[ASN][1000 genomes] |
| rs4575791 | 0.80[ASN][1000 genomes] |
| rs4911093 | 0.83[ASN][1000 genomes] |
| rs4911229 | 0.83[ASN][1000 genomes] |
| rs4911231 | 0.85[ASN][1000 genomes] |
| rs4911232 | 0.83[ASN][1000 genomes] |
| rs6057570 | 0.83[EUR][1000 genomes] |
| rs6058699 | 0.97[ASN][1000 genomes] |
| rs6141302 | 0.80[ASN][1000 genomes] |
| rs6141304 | 0.82[ASN][1000 genomes] |
| rs6141310 | 0.91[ASN][1000 genomes] |
| rs6141721 | 0.84[ASN][1000 genomes] |
| rs6141723 | 0.89[ASN][1000 genomes] |
| rs6141724 | 0.93[ASN][1000 genomes] |
| rs910888 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASXL1 | Distal transcriptional regulation |
| C20orf112 | RNA binding protein mediated regulation |
| ENSG00000236772 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014