SNP Report
Basic Infomation
| Name | rs13039485 dbSNP |
|---|---|
| Location | chr:20,31014386 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1040752 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs13039495 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs13043144 | 0.88[AFR][1000 genomes] |
| rs1467479 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs1885292 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs2236155 | 0.83[AMR][1000 genomes] |
| rs2281542 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs2295763 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs2295764 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs3746611 | 0.84[AMR][1000 genomes] |
| rs3746612 | 0.90[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs3818190 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs4575791 | 0.81[AFR][1000 genomes] |
| rs4911093 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs4911229 | 0.85[AMR][1000 genomes] |
| rs4911231 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs4911232 | 0.87[AMR][1000 genomes] |
| rs6141304 | 0.89[AFR][1000 genomes] |
| rs6141701 | 0.86[AFR][1000 genomes] |
| rs6141721 | 0.87[AMR][1000 genomes] |
| rs6141723 | 0.82[AMR][1000 genomes] |
| rs6141724 | 0.85[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASXL1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014