SNP Report

Basic Infomation

Name	rs13043144 dbSNP
Location	chr:20,31028010
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1040751	0.91[ASN][1000 genomes]
rs1040752	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11699120	0.81[EUR][1000 genomes]
rs13039485	0.88[AFR][1000 genomes]
rs13039495	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1412997	0.81[EUR][1000 genomes]
rs1412998	0.81[EUR][1000 genomes]
rs14353	0.81[EUR][1000 genomes]
rs1467479	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1737887	0.83[ASN][1000 genomes]
rs1885292	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2208131	0.81[EUR][1000 genomes]
rs2236155	0.90[EUR][1000 genomes]
rs2281542	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2295454	0.81[EUR][1000 genomes]
rs2295762	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2295763	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2295764	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424885	0.82[ASN][1000 genomes]
rs3746611	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3746612	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3818190	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4575791	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4911093	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4911229	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4911231	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4911232	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6058699	0.94[EUR][1000 genomes]
rs6141292	0.81[EUR][1000 genomes]
rs6141293	0.81[EUR][1000 genomes]
rs6141294	0.81[EUR][1000 genomes]
rs6141302	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6141304	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6141310	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6141680	0.81[EUR][1000 genomes]
rs6141681	0.81[EUR][1000 genomes]
rs6141682	0.81[EUR][1000 genomes]
rs6141685	0.81[EUR][1000 genomes]
rs6141687	0.81[EUR][1000 genomes]
rs6141689	0.81[EUR][1000 genomes]
rs6141701	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6141721	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6141723	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6141724	0.94[EUR][1000 genomes]
rs62206870	0.81[EUR][1000 genomes]
rs9798511	0.83[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PLAGL2	Distal transcriptional regulation
POFUT1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)