SNP Report

Basic Infomation

Name	rs6141680 dbSNP
Location	chr:20,30929192
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 64)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1028563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1029116	0.96[ASN][1000 genomes]
rs1040751	0.83[ASN][1000 genomes]
rs1040752	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11699120	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12480004	0.96[ASN][1000 genomes]
rs13037142	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13043144	0.81[EUR][1000 genomes]
rs1412997	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1412998	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs14353	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1467479	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1885292	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1984792	0.83[EUR][1000 genomes]
rs2093146	0.80[EUR][1000 genomes]
rs2151437	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2208131	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2281542	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2295454	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2295762	0.86[ASN][1000 genomes]
rs2295763	0.86[ASN][1000 genomes]
rs2295764	0.87[ASN][1000 genomes]
rs2424873	0.82[ASN][1000 genomes]
rs2424876	0.97[ASN][1000 genomes]
rs2424885	0.92[ASN][1000 genomes]
rs35290636	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3746606	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3746611	0.82[EUR][1000 genomes]
rs3746612	0.83[ASN][1000 genomes]
rs3787373	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3813921	0.81[ASN][1000 genomes]
rs3818190	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4493341	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4575791	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4911088	0.81[EUR][1000 genomes]
rs4911089	0.82[EUR][1000 genomes]
rs4911093	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4911229	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4911231	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4911232	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58921650	0.85[EUR][1000 genomes]
rs6087882	0.82[ASN][1000 genomes]
rs6119241	0.82[ASN][1000 genomes]
rs6141289	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6141291	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6141292	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6141293	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6141294	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6141302	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6141304	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6141310	0.83[ASN][1000 genomes]
rs6141659	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6141666	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6141681	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6141682	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6141685	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6141687	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6141689	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6141701	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6141721	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6141723	0.81[ASN][1000 genomes]
rs62206870	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7273804	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9798511	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ASXL1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)