SNP Report

Basic Infomation

Name	rs3813921 dbSNP
Location	chr:20,30921846
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 51)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1028563	0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs1029116	1.00[CEU][hapmap];0.84[JPT][hapmap];0.96[TSI][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1040751	0.85[EUR][1000 genomes]
rs1129012	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11699120	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs12479832	0.83[CHB][hapmap];0.85[MEX][hapmap]
rs12480004	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1412997	0.84[JPT][hapmap]
rs1412998	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs14353	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs17266770	0.81[CHB][hapmap]
rs17267078	0.83[CHB][hapmap]
rs1737887	0.80[CEU][hapmap];0.84[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs1737890	0.84[CEU][hapmap]
rs1885292	0.84[JPT][hapmap]
rs2151437	0.84[JPT][hapmap]
rs2208131	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs2281361	0.83[CHB][hapmap];0.85[MEX][hapmap]
rs2295454	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs2295762	0.84[JPT][hapmap]
rs2295764	0.84[JPT][hapmap]
rs2424873	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2424876	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2424885	0.93[EUR][1000 genomes]
rs34315674	0.93[EUR][1000 genomes]
rs34358744	0.93[EUR][1000 genomes]
rs3746606	0.84[JPT][hapmap]
rs3746611	0.80[JPT][hapmap]
rs3787373	0.84[JPT][hapmap]
rs3813922	0.80[YRI][hapmap]
rs3818190	0.84[JPT][hapmap]
rs4575791	0.84[JPT][hapmap]
rs4911229	0.84[JPT][hapmap]
rs6057570	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6061194	0.83[CHB][hapmap];0.85[MEX][hapmap]
rs6087862	1.00[CEU][hapmap];0.84[JPT][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes]
rs6087882	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6119231	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6119241	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6119771	0.83[CHB][hapmap]
rs6141292	0.81[ASN][1000 genomes]
rs6141294	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs6141302	0.84[JPT][hapmap]
rs6141659	0.84[JPT][hapmap]
rs6141680	0.81[ASN][1000 genomes]
rs6141682	0.81[ASN][1000 genomes]
rs6141689	0.82[ASN][1000 genomes]
rs6141721	0.84[JPT][hapmap]
rs6141723	0.80[JPT][hapmap]
rs62206870	0.80[ASN][1000 genomes]
rs8118061	0.83[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
KIF3B	Proximal transcriptional regulation
ASXL1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
FAM83C	SCAN
C20orf185	SCAN
DUSP15	SCAN