SNP Report
Basic Infomation
| Name | rs12480004 dbSNP |
|---|---|
| Location | chr:20,30923034 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 58)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1028563 | 0.96[ASN][1000 genomes] |
| rs1029116 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1040751 | 0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1040752 | 0.83[ASN][1000 genomes] |
| rs1129012 | 0.95[EUR][1000 genomes] |
| rs11699120 | 0.96[ASN][1000 genomes] |
| rs13037142 | 0.94[ASN][1000 genomes] |
| rs1412997 | 0.95[ASN][1000 genomes] |
| rs1412998 | 0.97[ASN][1000 genomes] |
| rs14353 | 0.98[ASN][1000 genomes] |
| rs1737887 | 0.83[ASN][1000 genomes] |
| rs1885292 | 0.84[ASN][1000 genomes] |
| rs2151437 | 0.95[ASN][1000 genomes] |
| rs2208131 | 0.97[ASN][1000 genomes] |
| rs2281542 | 0.84[ASN][1000 genomes] |
| rs2295454 | 0.97[ASN][1000 genomes] |
| rs2295762 | 0.84[ASN][1000 genomes] |
| rs2295763 | 0.84[ASN][1000 genomes] |
| rs2295764 | 0.85[ASN][1000 genomes] |
| rs2424873 | 0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2424876 | 0.94[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2424885 | 0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34315674 | 0.91[EUR][1000 genomes] |
| rs34358744 | 0.91[EUR][1000 genomes] |
| rs3746606 | 0.94[ASN][1000 genomes] |
| rs3746612 | 0.83[ASN][1000 genomes] |
| rs3813921 | 0.98[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3818190 | 0.85[ASN][1000 genomes] |
| rs4575791 | 0.92[ASN][1000 genomes] |
| rs4911093 | 0.83[ASN][1000 genomes] |
| rs4911229 | 0.84[ASN][1000 genomes] |
| rs4911231 | 0.85[ASN][1000 genomes] |
| rs4911232 | 0.82[ASN][1000 genomes] |
| rs6057570 | 0.90[EUR][1000 genomes] |
| rs6087862 | 0.93[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6087882 | 0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6119231 | 0.87[EUR][1000 genomes] |
| rs6119241 | 0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6141289 | 0.94[ASN][1000 genomes] |
| rs6141291 | 0.85[ASN][1000 genomes] |
| rs6141292 | 0.96[ASN][1000 genomes] |
| rs6141293 | 0.95[ASN][1000 genomes] |
| rs6141294 | 0.97[ASN][1000 genomes] |
| rs6141302 | 0.92[ASN][1000 genomes] |
| rs6141304 | 0.89[ASN][1000 genomes] |
| rs6141310 | 0.83[ASN][1000 genomes] |
| rs6141680 | 0.96[ASN][1000 genomes] |
| rs6141681 | 0.85[ASN][1000 genomes] |
| rs6141682 | 0.96[ASN][1000 genomes] |
| rs6141685 | 0.95[ASN][1000 genomes] |
| rs6141687 | 0.95[ASN][1000 genomes] |
| rs6141689 | 0.97[ASN][1000 genomes] |
| rs6141701 | 0.87[ASN][1000 genomes] |
| rs6141721 | 0.83[ASN][1000 genomes] |
| rs6141723 | 0.81[ASN][1000 genomes] |
| rs62206870 | 0.96[ASN][1000 genomes] |
| rs7273804 | 0.81[ASN][1000 genomes] |
| rs9798511 | 0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASXL1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014