SNP Report
Basic Infomation
| Name | rs34315674 dbSNP |
|---|---|
| Location | chr:20,30861395 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1029116 | 0.88[EUR][1000 genomes] |
| rs1129012 | 0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12480004 | 0.91[EUR][1000 genomes] |
| rs2093146 | 0.81[ASN][1000 genomes] |
| rs2424873 | 0.91[EUR][1000 genomes] |
| rs2424876 | 0.90[EUR][1000 genomes] |
| rs2424885 | 0.86[EUR][1000 genomes] |
| rs34358744 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3813921 | 0.93[EUR][1000 genomes] |
| rs4911088 | 0.84[ASN][1000 genomes] |
| rs6057570 | 0.84[EUR][1000 genomes] |
| rs6087862 | 0.98[EUR][1000 genomes] |
| rs6087882 | 0.93[EUR][1000 genomes] |
| rs6119231 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6119241 | 0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIF3B | Proximal transcriptional regulation |
| KIF3B | Distal transcriptional regulation |
| ENSG00000264308 | Distal transcriptional regulation |
| ASXL1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014