SNP Report
Basic Infomation
| Name | rs6141657 dbSNP |
|---|---|
| Location | chr:20,30863648 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1028563 | 0.80[EUR][1000 genomes] |
| rs13037142 | 0.80[EUR][1000 genomes] |
| rs1984792 | 0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2093146 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2151437 | 0.80[EUR][1000 genomes] |
| rs35290636 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3746606 | 0.80[EUR][1000 genomes] |
| rs3787373 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4493341 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4911088 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4911089 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs58921650 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6087862 | 0.85[ASN][1000 genomes] |
| rs6141277 | 0.82[EUR][1000 genomes] |
| rs6141289 | 0.80[EUR][1000 genomes] |
| rs6141646 | 0.84[EUR][1000 genomes] |
| rs6141659 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6141666 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62208761 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIF3B | Proximal transcriptional regulation |
| PLAGL2 | Distal transcriptional regulation |
| POFUT1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014