SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1022732	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11167172	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs13111	1.00[CHD][hapmap]
rs1555445	0.89[CEU][hapmap]
rs1810635	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs293554	1.00[CHD][hapmap];0.87[MEX][hapmap]
rs293561	0.83[MEX][hapmap]
rs293566	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293570	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4911097	0.83[MEX][hapmap]
rs4911234	0.87[MEX][hapmap]
rs4911235	0.83[MEX][hapmap]
rs4911242	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4911243	1.00[ASN][1000 genomes]
rs6087398	0.87[MEX][hapmap]
rs6119267	0.83[CEU][hapmap]
rs6119272	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6119879	0.83[MEX][hapmap]
rs6119893	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6119904	0.86[MEX][hapmap]
rs6141319	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.96[MEX][hapmap];1.00[ASN][1000 genomes]
rs6141734	0.83[MEX][hapmap]
rs6579020	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
C20orf112	Distal transcriptional regulation
ASXL1	Distal transcriptional regulation
C20orf112	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
TMC4	SCAN
BCL2L1	SCAN