SNP Report
Basic Infomation
| Name | rs6579020 dbSNP |
|---|---|
| Location | chr:20,31074230 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1022732 | 1.00[CHB][hapmap] |
| rs11167172 | 1.00[CHB][hapmap] |
| rs1737893 | 0.82[ASN][1000 genomes] |
| rs293561 | 1.00[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs293566 | 1.00[CHB][hapmap] |
| rs293567 | 1.00[CHB][hapmap] |
| rs293570 | 1.00[CHB][hapmap] |
| rs4911242 | 1.00[CHB][hapmap] |
| rs6057586 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058715 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058719 | 1.00[CHB][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058720 | 1.00[CHB][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6119272 | 1.00[CHB][hapmap] |
| rs6141319 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C20orf112 | Proximal transcriptional regulation |
| C20orf112 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014