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rVarBase
SNP Report
Basic Infomation
Name
rs6058720  
dbSNP
Location
chr:20,31080092
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1737893
0.82[ASN][1000 genomes]
rs293561
1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs6057586
1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6058715
1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6058719
1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6579020
1.00[CHB][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ASXL1
Distal transcriptional regulation
C20orf112
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)