SNP Report
Basic Infomation
| Name | rs6119272 dbSNP |
|---|---|
| Location | chr:20,31193379 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1022732 | 1.00[CHB][hapmap] |
| rs1040555 | 1.00[CHD][hapmap] |
| rs11167172 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11699129 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11699238 | 1.00[ASN][1000 genomes] |
| rs2424895 | 1.00[CHD][hapmap] |
| rs2424906 | 1.00[CHD][hapmap] |
| rs2424907 | 1.00[CHD][hapmap] |
| rs2424913 | 1.00[CHD][hapmap] |
| rs2424914 | 1.00[CHD][hapmap] |
| rs2424922 | 1.00[CHD][hapmap] |
| rs2424928 | 1.00[CHD][hapmap] |
| rs293554 | 1.00[CHD][hapmap] |
| rs293566 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs293567 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs293570 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs35532158 | 1.00[ASN][1000 genomes] |
| rs4911242 | 1.00[CHB][hapmap] |
| rs6058883 | 1.00[CHD][hapmap] |
| rs6058891 | 1.00[CHD][hapmap] |
| rs61114499 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6141319 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs6579020 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C20orf112 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014