SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1022732	1.00[CHB][hapmap]
rs1040555	1.00[CHD][hapmap]
rs11699129	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11699238	1.00[ASN][1000 genomes]
rs2424895	1.00[CHD][hapmap]
rs2424906	1.00[CHD][hapmap]
rs2424907	1.00[CHD][hapmap]
rs2424913	1.00[CHD][hapmap]
rs2424914	1.00[CHD][hapmap]
rs2424922	1.00[CHD][hapmap]
rs2424928	1.00[CHD][hapmap]
rs293554	1.00[CHD][hapmap]
rs293566	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs293567	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs293570	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs35532158	1.00[ASN][1000 genomes]
rs4911242	1.00[CHB][hapmap]
rs6058883	1.00[CHD][hapmap]
rs6058891	1.00[CHD][hapmap]
rs61114499	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6119272	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6141319	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6579020	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
C20orf112	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 5)