SNP Report

Basic Infomation

Name	rs293554 dbSNP
Location	chr:20,31085857
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11167172	1.00[CHD][hapmap]
rs13111	1.00[CHD][hapmap]
rs1555132	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs1737893	0.91[EUR][1000 genomes]
rs1737894	0.95[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1742983	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424888	0.88[EUR][1000 genomes]
rs293534	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293536	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293543	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs293544	1.00[CEU][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293549	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293550	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs293553	1.00[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293558	1.00[CEU][hapmap];0.81[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293559	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293561	0.95[MEX][hapmap]
rs293566	1.00[CHD][hapmap];0.87[MEX][hapmap]
rs293567	1.00[CHD][hapmap];0.87[MEX][hapmap]
rs293570	1.00[CHD][hapmap]
rs4911234	0.91[MEX][hapmap]
rs4911235	0.87[MEX][hapmap]
rs6119248	0.82[EUR][1000 genomes]
rs6119272	1.00[CHD][hapmap]
rs6141319	1.00[CHD][hapmap];0.83[MEX][hapmap]
rs6141734	0.87[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
C20orf112	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)