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rVarBase
SNP Report
Basic Infomation
Name
rs6119248  
dbSNP
Location
chr:20,31049399
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1737893
0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1737894
0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2143534
0.81[AMR][1000 genomes]
rs2424888
0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs293534
0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs293536
0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs293543
0.81[EUR][1000 genomes]
rs293544
0.85[EUR][1000 genomes]
rs293549
0.81[EUR][1000 genomes]
rs293553
0.82[EUR][1000 genomes]
rs293554
0.82[EUR][1000 genomes]
rs293558
0.82[EUR][1000 genomes]
rs293559
0.82[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
C20orf112
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)