SNP Report
Basic Infomation
| Name | rs2143534 dbSNP |
|---|---|
| Location | chr:20,31055792 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12480462 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1555133 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17356521 | 0.87[EUR][1000 genomes] |
| rs1737891 | 0.80[ASN][1000 genomes] |
| rs1737893 | 0.83[AMR][1000 genomes] |
| rs293535 | 0.80[ASN][1000 genomes] |
| rs293537 | 0.84[ASN][1000 genomes] |
| rs293540 | 0.84[ASN][1000 genomes] |
| rs293541 | 0.84[ASN][1000 genomes] |
| rs293555 | 0.84[ASN][1000 genomes] |
| rs293556 | 0.84[ASN][1000 genomes] |
| rs293560 | 0.85[ASN][1000 genomes] |
| rs34310097 | 0.88[EUR][1000 genomes] |
| rs4911234 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4911235 | 0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6058714 | 0.86[EUR][1000 genomes] |
| rs6119248 | 0.81[AMR][1000 genomes] |
| rs6141728 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6141734 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs875519 | 0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASXL1 | Distal transcriptional regulation |
| C20orf112 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014