SNP Report
Basic Infomation
| Name | rs875519 dbSNP |
|---|---|
| Location | chr:20,31091235 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12480462 | 0.84[ASN][1000 genomes] |
| rs1555133 | 0.91[CHB][hapmap];0.96[CHD][hapmap];0.96[MEX][hapmap] |
| rs17356521 | 1.00[CHB][hapmap] |
| rs2143534 | 0.84[ASN][1000 genomes] |
| rs293540 | 1.00[CHB][hapmap] |
| rs293541 | 1.00[CHB][hapmap] |
| rs293555 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[ASN][1000 genomes] |
| rs293556 | 1.00[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs293557 | 0.83[ASN][1000 genomes] |
| rs293560 | 0.82[CHB][hapmap];0.88[ASN][1000 genomes] |
| rs4911234 | 1.00[CHB][hapmap] |
| rs4911235 | 1.00[CHB][hapmap] |
| rs6087398 | 1.00[JPT][hapmap] |
| rs6141734 | 1.00[CHB][hapmap];0.81[CHD][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap] |
| rs751199 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C20orf112 | Distal transcriptional regulation |
| C20orf112 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014