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rVarBase
SNP Report
Basic Infomation
Name
rs293557  
dbSNP
Location
chr:20,31088232
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs293537
0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs293539
0.81[EUR][1000 genomes]
rs293540
0.90[EUR][1000 genomes]
rs293541
0.90[EUR][1000 genomes]
rs293548
0.82[EUR][1000 genomes]
rs293552
0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs293555
0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs293556
0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs293560
0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs756001
0.81[EUR][1000 genomes]
rs875519
0.83[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
C20orf112
Distal transcriptional regulation
C20orf112
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)