SNP Report

Basic Infomation

Name	rs4911235 dbSNP
Location	chr:20,31078606
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 30)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12480462	0.87[EUR][1000 genomes]
rs1555133	0.89[CEU][hapmap];0.91[CHB][hapmap];0.91[GIH][hapmap];0.97[TSI][hapmap];0.80[EUR][1000 genomes]
rs17356521	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs1737891	1.00[JPT][hapmap]
rs2143534	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs293535	1.00[JPT][hapmap]
rs293537	0.91[ASN][1000 genomes]
rs293540	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs293541	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs293542	1.00[JPT][hapmap]
rs293545	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs293546	0.84[ASN][1000 genomes]
rs293547	0.82[ASN][1000 genomes]
rs293548	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs293551	1.00[JPT][hapmap]
rs293552	1.00[JPT][hapmap]
rs293554	0.87[MEX][hapmap]
rs293555	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs293556	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs293560	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs293561	0.82[MEX][hapmap]
rs293566	0.83[MEX][hapmap]
rs293567	0.83[MEX][hapmap]
rs34310097	0.85[EUR][1000 genomes]
rs4911234	0.85[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6058714	0.83[EUR][1000 genomes]
rs6087398	0.86[JPT][hapmap]
rs6141728	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6141734	0.85[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs875519	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
ASXL1	Distal transcriptional regulation
C20orf112	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)