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rVarBase
SNP Report
Basic Infomation
Name
rs293546  
dbSNP
Location
chr:20,31079748
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1737891
0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs293533
0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs293535
0.84[ASN][1000 genomes]
rs293537
0.81[ASN][1000 genomes]
rs293538
0.93[ASN][1000 genomes]
rs293540
0.81[ASN][1000 genomes]
rs293541
0.81[ASN][1000 genomes]
rs293542
0.93[ASN][1000 genomes]
rs293545
0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293547
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs293548
0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4911235
0.84[ASN][1000 genomes]
rs6058714
0.86[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ASXL1
Distal transcriptional regulation
C20orf112
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)