SNP Report
Basic Infomation
| Name | rs293544 dbSNP |
|---|---|
| Location | chr:20,31076359 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1555132 | 0.91[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs1737893 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1737894 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1742983 | 1.00[CEU][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2424888 | 0.91[EUR][1000 genomes] |
| rs293534 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs293536 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs293543 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs293549 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs293550 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs293553 | 1.00[CEU][hapmap];0.82[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs293554 | 1.00[CEU][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs293558 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs293559 | 1.00[CEU][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6119248 | 0.85[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C20orf112 | Proximal transcriptional regulation |
| C20orf112 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014