SNP Report
Basic Infomation
| Name | rs2424895 dbSNP |
|---|---|
| Location | chr:20,31335978 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 74)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1003521 | 0.86[AMR][1000 genomes] |
| rs1007122 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1007123 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1007124 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1040555 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11167172 | 1.00[CHD][hapmap] |
| rs11167186 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs12329424 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1333469 | 0.86[AMR][1000 genomes] |
| rs1569686 | 0.86[AMR][1000 genomes] |
| rs17370942 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs1855349 | 0.82[AMR][1000 genomes] |
| rs1855350 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1883729 | 0.86[AMR][1000 genomes] |
| rs1883730 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1997797 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2018002 | 0.84[AMR][1000 genomes] |
| rs2064350 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2065576 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2377667 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2424899 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2424903 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2424904 | 0.88[AMR][1000 genomes] |
| rs2424905 | 0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2424906 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2424907 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2424909 | 0.86[AMR][1000 genomes] |
| rs2424913 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2424914 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2424915 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2424922 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2424928 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs242528 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap] |
| rs242536 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap] |
| rs242537 | 1.00[CHB][hapmap] |
| rs242538 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs242551 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap] |
| rs2889703 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911105 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4911106 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4911107 | 0.85[GIH][hapmap];0.87[MEX][hapmap] |
| rs4911110 | 0.85[GIH][hapmap];0.87[MEX][hapmap];0.83[AMR][1000 genomes] |
| rs4911252 | 0.96[CEU][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4911253 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911256 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911260 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911261 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911263 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6057647 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058859 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6058860 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6058869 | 0.85[GIH][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6058883 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058891 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058892 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058893 | 0.85[GIH][hapmap] |
| rs6087420 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6087989 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6087990 | 0.85[GIH][hapmap];0.83[MEX][hapmap];0.82[AMR][1000 genomes] |
| rs6087992 | 0.82[EUR][1000 genomes] |
| rs6087995 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6087999 | 0.86[AMR][1000 genomes] |
| rs6119272 | 1.00[CHD][hapmap] |
| rs6119279 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6119281 | 0.84[AMR][1000 genomes] |
| rs6119946 | 0.96[CEU][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6141319 | 1.00[CHD][hapmap] |
| rs709046 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs742630 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs853848 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs853849 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs853853 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs910083 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs993419 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COMMD7 | Proximal transcriptional regulation |
| COMMD7 | Distal transcriptional regulation |
| DNMT3B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014