SNP Report
Basic Infomation
| Name | rs11167186 dbSNP |
|---|---|
| Location | chr:20,31484417 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1040555 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs11167185 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs170287 | 1.00[JPT][hapmap] |
| rs17370942 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1997797 | 1.00[JPT][hapmap] |
| rs1998112 | 1.00[JPT][hapmap] |
| rs2065576 | 1.00[JPT][hapmap] |
| rs2424895 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs2424906 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs2424907 | 0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs2424913 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs2424914 | 1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs2424915 | 1.00[JPT][hapmap] |
| rs2424922 | 0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs2424928 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs2424932 | 1.00[ASW][hapmap] |
| rs242528 | 1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap] |
| rs242536 | 1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap] |
| rs242538 | 1.00[ASW][hapmap];1.00[JPT][hapmap] |
| rs242551 | 1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap] |
| rs2889703 | 1.00[JPT][hapmap] |
| rs370177 | 1.00[JPT][hapmap] |
| rs383753 | 1.00[JPT][hapmap] |
| rs399355 | 1.00[JPT][hapmap] |
| rs403461 | 1.00[JPT][hapmap] |
| rs4911256 | 1.00[JPT][hapmap] |
| rs4911261 | 1.00[JPT][hapmap] |
| rs4911263 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs4911298 | 1.00[JPT][hapmap] |
| rs6057647 | 1.00[JPT][hapmap] |
| rs6058883 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs6058891 | 0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs66909366 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs709046 | 1.00[JPT][hapmap] |
| rs761937 | 1.00[JPT][hapmap] |
| rs853848 | 1.00[JPT][hapmap] |
| rs853849 | 1.00[JPT][hapmap] |
| rs853853 | 1.00[JPT][hapmap] |
| rs927107 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EFCAB8 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014