SNP Report

Basic Infomation

Name	rs242538 dbSNP
Location	chr:20,31436747
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 38)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1040555	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11167186	1.00[ASW][hapmap];1.00[JPT][hapmap]
rs17370942	1.00[JPT][hapmap]
rs1997797	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1998112	1.00[JPT][hapmap]
rs2065576	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2424895	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2424906	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2424907	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2424913	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2424914	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap]
rs2424915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2424922	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2424928	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2424932	1.00[ASW][hapmap]
rs242528	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242536	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242537	1.00[CHB][hapmap]
rs242540	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs242544	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242547	0.84[EUR][1000 genomes]
rs242548	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242551	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2889703	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs404543	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4911256	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4911261	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4911263	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6057647	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6058883	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6058891	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs66499347	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs709046	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73114154	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs853848	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs853849	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs853853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs853859	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000260536	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 16)

eQTL related gene	Source
P2RX5	SCAN
NM_207474	Pritchard
AL512726	Pritchard
CAMK1G	Pritchard
NM_182584	Pritchard
COMMD7	Pritchard
AF090883	Pritchard
POFUT1	Pritchard
C20orf71	Pritchard
TSPYL3	Pritchard
Contig55248_RC	Pritchard
XKR7	Pritchard
CAMK1G	GTEx
FLJ42953	GTEx
C19orf66	GTEx
LOC284805	GTEx