SNP Report
Basic Infomation
| Name | rs404543 dbSNP |
|---|---|
| Location | chr:20,31407661 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2424914 | 0.82[AFR][1000 genomes] |
| rs242528 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs242536 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs242538 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs242540 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs242544 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs242547 | 0.83[EUR][1000 genomes] |
| rs242548 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs242551 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4911261 | 0.85[AFR][1000 genomes] |
| rs66499347 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73114154 | 0.82[AFR][1000 genomes] |
| rs853849 | 0.89[EUR][1000 genomes] |
| rs853853 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs853859 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAPRE1 | Proximal transcriptional regulation |
| ECHS1 | Distal transcriptional regulation |
| GAPDH | Distal transcriptional regulation |
| ANXA2 | Distal transcriptional regulation |
| COMMD7 | Distal transcriptional regulation |
| DNMT3B | Distal transcriptional regulation |
| ASXL1 | Distal transcriptional regulation |
| ENSG00000188825 | Distal transcriptional regulation |
| ICAM4 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014