SNP Report
Basic Infomation
| Name | rs853849 dbSNP |
|---|---|
| Location | chr:20,31439355 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1040555 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11167186 | 1.00[JPT][hapmap] |
| rs17370942 | 1.00[JPT][hapmap] |
| rs1997797 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1998112 | 1.00[JPT][hapmap] |
| rs2065576 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424895 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424906 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424907 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424913 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424914 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs2424915 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424922 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424928 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs242528 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs242536 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs242537 | 1.00[CHB][hapmap] |
| rs242538 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs242540 | 0.91[EUR][1000 genomes] |
| rs242544 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs242547 | 0.80[EUR][1000 genomes] |
| rs242548 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs242551 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2889703 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs404543 | 0.89[EUR][1000 genomes] |
| rs4911256 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4911261 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4911263 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6057647 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6058880 | 0.81[YRI][hapmap] |
| rs6058883 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6058891 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs66499347 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs709046 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7270085 | 0.95[YRI][hapmap] |
| rs8123073 | 1.00[YRI][hapmap] |
| rs853848 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs853853 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs853859 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000260536 | Distal transcriptional regulation |
| ENSG00000260257 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014